| Category |
Service name |
Description |
| |
cons
(WSDL)
|
Create a consensus sequence from a multiple alignment |
|
| |
consambig
(WSDL)
|
Create an ambiguous consensus sequence from a multiple alignment |
|
| |
megamerger
(WSDL)
|
Merge two large overlapping DNA sequences |
|
| |
merger
(WSDL)
|
Merge two overlapping sequences |
|
| |
diffseq
(WSDL)
|
Compare and report features of two similar sequences |
|
| |
dotmatcher
(WSDL)
|
Draw a threshold dotplot of two sequences |
|
| |
dotpath
(WSDL)
|
Draw a non-overlapping wordmatch dotplot of two sequences |
|
| |
dottup
(WSDL)
|
Displays a wordmatch dotplot of two sequences |
|
| |
polydot
(WSDL)
|
Draw dotplots for all-against-all comparison of a sequence set |
|
| |
esim4
(WSDL)
|
Align an mRNA to a genomic DNA sequence |
|
| |
est2genome
(WSDL)
|
Align EST sequences to genomic DNA sequence |
|
| |
needle
(WSDL)
|
Needleman-Wunsch global alignment of two sequences |
|
| |
needleall
(WSDL)
|
Many-to-many pairwise alignments of two sequence sets |
|
| |
stretcher
(WSDL)
|
Needleman-Wunsch rapid global alignment of two sequences |
|
| |
matcher
(WSDL)
|
Waterman-Eggert local alignment of two sequences |
|
| |
seqmatchall
(WSDL)
|
All-against-all word comparison of a sequence set |
|
| |
supermatcher
(WSDL)
|
Calculate approximate local pair-wise alignments of larger sequences |
|
| |
water
(WSDL)
|
Smith-Waterman local alignment of sequences |
|
| |
wordfinder
(WSDL)
|
Match large sequences against one or more other sequences |
|
| |
wordmatch
(WSDL)
|
Finds regions of identity (exact matches) of two sequences |
|
| |
edialign
(WSDL)
|
Local multiple alignment of sequences |
|
| |
emma
(WSDL)
|
Multiple sequence alignment (ClustalW wrapper) |
|
| |
infoalign
(WSDL)
|
Display basic information about a multiple sequence alignment |
|
| |
mse
(WSDL)
|
Multiple Sequence Editor |
|
| |
plotcon
(WSDL)
|
Plot conservation of a sequence alignment |
|
| |
prettyplot
(WSDL)
|
Draw a sequence alignment with pretty formatting |
|
| |
showalign
(WSDL)
|
Display a multiple sequence alignment in pretty format |
|
| |
tranalign
(WSDL)
|
Generate an alignment of nucleic coding regions from aligned proteins |
|
| |
emira
(WSDL)
|
MIRA fragment assembly program |
|
| |
emiraest
(WSDL)
|
MIRAest fragment assembly program |
|
| |
cirdna
(WSDL)
|
Draws circular maps of DNA constructs |
|
| |
lindna
(WSDL)
|
Draws linear maps of DNA constructs |
|
| |
pepnet
(WSDL)
|
Draw a helical net for a protein sequence |
|
| |
pepwheel
(WSDL)
|
Draw a helical wheel diagram for a protein sequence |
|
| |
prettyplot
(WSDL)
|
Draw a sequence alignment with pretty formatting |
|
| |
prettyseq
(WSDL)
|
Write a nucleotide sequence and its translation to file |
|
| |
remap
(WSDL)
|
Display restriction enzyme binding sites in a nucleotide sequence |
|
| |
seealso
(WSDL)
|
Finds programs with similar function to a specified program |
|
| |
showalign
(WSDL)
|
Display a multiple sequence alignment in pretty format |
|
| |
showdb
(WSDL)
|
Displays information on configured databases |
|
| |
showfeat
(WSDL)
|
Display features of a sequence in pretty format |
|
| |
showpep
(WSDL)
|
Displays protein sequences with features in pretty format |
|
| |
showseq
(WSDL)
|
Displays sequences with features in pretty format |
|
| |
sixpack
(WSDL)
|
Display a DNA sequence with 6-frame translation and ORFs |
|
| |
textsearch
(WSDL)
|
Search the textual description of sequence(s) |
|
| |
aligncopy
(WSDL)
|
Reads and writes alignments |
|
| |
aligncopypair
(WSDL)
|
Reads and writes pairs from alignments |
|
| |
biosed
(WSDL)
|
Replace or delete sequence sections |
|
| |
codcopy
(WSDL)
|
Copy and reformat a codon usage table |
|
| |
cutseq
(WSDL)
|
Removes a section from a sequence |
|
| |
degapseq
(WSDL)
|
Removes non-alphabetic (e.g. gap) characters from sequences |
|
| |
descseq
(WSDL)
|
Alter the name or description of a sequence. |
|
| |
domtesta
(WSDL)
|
Reads an XML file into the DOM and writes it back out |
|
| |
domtestb
(WSDL)
|
Create |
|
| |
domtestc
(WSDL)
|
Create and write out some typical XML |
|
| |
domtestd
(WSDL)
|
Create some XML and search for an element |
|
| |
entret
(WSDL)
|
Retrieves sequence entries from flatfile databases and files |
|
| |
featcopy
(WSDL)
|
Reads and writes a feature table |
|
| |
featreport
(WSDL)
|
Reads and writes a feature table |
|
| |
listor
(WSDL)
|
Write a list file of the logical OR of two sets of sequences |
|
| |
makenucseq
(WSDL)
|
Create random nucleotide sequences |
|
| |
makeprotseq
(WSDL)
|
Create random protein sequences |
|
| |
martattributes
(WSDL)
|
Return attributes from a mart dataset from a mart host |
|
| |
martdatasets
(WSDL)
|
Return datasets from a mart from a registry |
|
| |
martfilters
(WSDL)
|
Return filters from a mart dataset from a mart host |
|
| |
martquery
(WSDL)
|
Perform a biomart query |
|
| |
martregistry
(WSDL)
|
Show Biomart registries listed on a host |
|
| |
martseqs
(WSDL)
|
Show Biomart datasets that can return sequences |
|
| |
maskambignuc
(WSDL)
|
Masks all ambiguity characters in nucleotide sequences with N |
|
| |
maskambigprot
(WSDL)
|
Masks all ambiguity characters in protein sequences with X |
|
| |
maskfeat
(WSDL)
|
Write a sequence with masked features |
|
| |
maskseq
(WSDL)
|
Write a sequence with masked regions |
|
| |
newseq
(WSDL)
|
Create a sequence file from a typed-in sequence |
|
| |
nohtml
(WSDL)
|
Remove mark-up (e.g. HTML tags) from an ASCII text file |
|
| |
noreturn
(WSDL)
|
Remove carriage return from ASCII files |
|
| |
nospace
(WSDL)
|
Remove whitespace from an ASCII text file |
|
| |
notab
(WSDL)
|
Replace tabs with spaces in an ASCII text file |
|
| |
notseq
(WSDL)
|
Write to file a subset of an input stream of sequences |
|
| |
nthseq
(WSDL)
|
Write to file a single sequence from an input stream of sequences |
|
| |
nthseqset
(WSDL)
|
Reads and writes (returns) one set of sequences from many |
|
| |
pasteseq
(WSDL)
|
Insert one sequence into another |
|
| |
revseq
(WSDL)
|
Reverse and complement a nucleotide sequence |
|
| |
seqret
(WSDL)
|
Reads and writes (returns) sequences |
|
| |
seqretsetall
(WSDL)
|
Reads and writes (returns) many sets of sequences |
|
| |
sizeseq
(WSDL)
|
Sort sequences by size |
|
| |
skipredundant
(WSDL)
|
Remove redundant sequences from an input set |
|
| |
skipseq
(WSDL)
|
Reads and writes (returns) sequences |
|
| |
splitsource
(WSDL)
|
Split sequence(s) into original source sequences |
|
| |
splitter
(WSDL)
|
Split sequence(s) into smaller sequences |
|
| |
trimest
(WSDL)
|
Remove poly-A tails from nucleotide sequences |
|
| |
trimseq
(WSDL)
|
Remove unwanted characters from start and end of sequence(s) |
|
| |
trimspace
(WSDL)
|
Remove extra whitespace from an ASCII text file |
|
| |
union
(WSDL)
|
Concatenate multiple sequences into a single sequence |
|
| |
vectorstrip
(WSDL)
|
Removes vectors from the ends of nucleotide sequence(s) |
|
| |
yank
(WSDL)
|
Add a sequence reference (a full USA) to a list file |
|
| |
findkm
(WSDL)
|
Calculate and plot enzyme reaction data |
|
| |
coderet
(WSDL)
|
Extract CDS |
|
| |
maskfeat
(WSDL)
|
Write a sequence with masked features |
|
| |
showfeat
(WSDL)
|
Display features of a sequence in pretty format |
|
| |
twofeat
(WSDL)
|
Finds neighbouring pairs of features in sequence(s) |
|
| |
ehmmalign
(WSDL)
|
Align sequences to an HMM profile |
|
| |
ehmmbuild
(WSDL)
|
Build a profile HMM from an alignment. |
|
| |
ehmmcalibrate
(WSDL)
|
Calibrate HMM search statistics |
|
| |
ehmmconvert
(WSDL)
|
Convert between profile HMM file formats |
|
| |
ehmmemit
(WSDL)
|
Generate sequences from a profile HMM. |
|
| |
ehmmfetch
(WSDL)
|
Retrieve an HMM from an HMM database. |
|
| |
ehmmindex
(WSDL)
|
Create a binary SSI index for an HMM database. |
|
| |
ehmmpfam
(WSDL)
|
Search one or more sequences against an HMM database. |
|
| |
ehmmsearch
(WSDL)
|
Search a sequence database with a profile HMM |
|
| |
infoalign
(WSDL)
|
Display basic information about a multiple sequence alignment |
|
| |
infobase
(WSDL)
|
Return information on a given nucleotide base |
|
| |
inforesidue
(WSDL)
|
Return information on a given amino acid residue |
|
| |
infoseq
(WSDL)
|
Display basic information about sequences |
|
| |
seealso
(WSDL)
|
Finds programs with similar function to a specified program |
|
| |
showdb
(WSDL)
|
Displays information on configured databases |
|
| |
textsearch
(WSDL)
|
Search the textual description of sequence(s) |
|
| |
tfm
(WSDL)
|
Displays full documentation for an application |
|
| |
whichdb
(WSDL)
|
Search all sequence databases for an entry and retrieve it |
|
| |
wossname
(WSDL)
|
Finds programs by keywords in their short description |
|
| |
einverted
(WSDL)
|
Finds inverted repeats in nucleotide sequences |
|
| |
vrnaalifold
(WSDL)
|
RNA alignment folding |
|
| |
vrnaalifoldpf
(WSDL)
|
RNA alignment folding with partition |
|
| |
vrnacofold
(WSDL)
|
RNA cofolding |
|
| |
vrnacofoldconc
(WSDL)
|
RNA cofolding with concentrations |
|
| |
vrnacofoldpf
(WSDL)
|
RNA cofolding with partitioning |
|
| |
vrnadistance
(WSDL)
|
RNA distances |
|
| |
vrnaduplex
(WSDL)
|
RNA duplex calculation |
|
| |
vrnaeval
(WSDL)
|
RNA eval |
|
| |
vrnaevalpair
(WSDL)
|
RNA eval with cofold |
|
| |
vrnafold
(WSDL)
|
Calculate secondary structures of RNAs |
|
| |
vrnafoldpf
(WSDL)
|
Secondary structures of RNAs with partition |
|
| |
vrnaheat
(WSDL)
|
RNA melting |
|
| |
vrnainverse
(WSDL)
|
RNA sequences matching a structure |
|
| |
vrnalfold
(WSDL)
|
Calculate locally stable secondary structures of RNAs |
|
| |
vrnaplot
(WSDL)
|
Plot vrnafold output |
|
| |
vrnasubopt
(WSDL)
|
Calculate RNA suboptimals |
|
| |
cai
(WSDL)
|
Calculate codon adaptation index |
|
| |
chips
(WSDL)
|
Calculates Nc codon usage statistic |
|
| |
codcmp
(WSDL)
|
Codon usage table comparison |
|
| |
cusp
(WSDL)
|
Create a codon usage table from nucleotide sequence(s) |
|
| |
syco
(WSDL)
|
Draw synonymous codon usage statistic plot for a nucleotide sequence |
|
| |
banana
(WSDL)
|
Plot bending and curvature data for B-DNA |
|
| |
btwisted
(WSDL)
|
Calculate the twisting in a B-DNA sequence |
|
| |
chaos
(WSDL)
|
Draw a chaos game representation plot for a nucleotide sequence |
|
| |
compseq
(WSDL)
|
Calculate the composition of unique words in sequences |
|
| |
dan
(WSDL)
|
Calculates nucleic acid melting temperature |
|
| |
density
(WSDL)
|
Draw a nucleic acid density plot |
|
| |
freak
(WSDL)
|
Generate residue/base frequency table or plot |
|
| |
isochore
(WSDL)
|
Plots isochores in DNA sequences |
|
| |
sirna
(WSDL)
|
Finds siRNA duplexes in mRNA |
|
| |
wordcount
(WSDL)
|
Count and extract unique words in molecular sequence(s) |
|
| |
cpgplot
(WSDL)
|
Identify and plot CpG islands in nucleotide sequence(s) |
|
| |
cpgreport
(WSDL)
|
Identify and report CpG-rich regions in nucleotide sequence(s) |
|
| |
geecee
(WSDL)
|
Calculate fractional GC content of nucleic acid sequences |
|
| |
newcpgreport
(WSDL)
|
Identify CpG islands in nucleotide sequence(s) |
|
| |
newcpgseek
(WSDL)
|
Identify and report CpG-rich regions in nucleotide sequence(s) |
|
| |
getorf
(WSDL)
|
Finds and extracts open reading frames (ORFs) |
|
| |
marscan
(WSDL)
|
Finds matrix/scaffold recognition (MRS) signatures in DNA sequences |
|
| |
plotorf
(WSDL)
|
Plot potential open reading frames in a nucleotide sequence |
|
| |
showorf
(WSDL)
|
Display a nucleotide sequence and translation in pretty format |
|
| |
sixpack
(WSDL)
|
Display a DNA sequence with 6-frame translation and ORFs |
|
| |
syco
(WSDL)
|
Draw synonymous codon usage statistic plot for a nucleotide sequence |
|
| |
tcode
(WSDL)
|
Identify protein-coding regions using Fickett TESTCODE statistic |
|
| |
wobble
(WSDL)
|
Plot third base position variability in a nucleotide sequence |
|
| |
dreg
(WSDL)
|
Regular expression search of nucleotide sequence(s) |
|
| |
fuzznuc
(WSDL)
|
Search for patterns in nucleotide sequences |
|
| |
fuzztran
(WSDL)
|
Search for patterns in protein sequences (translated) |
|
| |
marscan
(WSDL)
|
Finds matrix/scaffold recognition (MRS) signatures in DNA sequences |
|
| |
msbar
(WSDL)
|
Mutate a sequence |
|
| |
shuffleseq
(WSDL)
|
Shuffles a set of sequences maintaining composition |
|
| |
eprimer3
(WSDL)
|
Picks PCR primers and hybridization oligos |
|
| |
primersearch
(WSDL)
|
Search DNA sequences for matches with primer pairs |
|
| |
stssearch
(WSDL)
|
Search a DNA database for matches with a set of STS primers |
|
| |
profit
(WSDL)
|
Scan one or more sequences with a simple frequency matrix |
|
| |
prophecy
(WSDL)
|
Create frequency matrix or profile from a multiple alignment |
|
| |
prophet
(WSDL)
|
Scan one or more sequences with a Gribskov or Henikoff profile |
|
| |
einverted
(WSDL)
|
Finds inverted repeats in nucleotide sequences |
|
| |
equicktandem
(WSDL)
|
Finds tandem repeats in nucleotide sequences |
|
| |
etandem
(WSDL)
|
Finds tandem repeats in a nucleotide sequence |
|
| |
palindrome
(WSDL)
|
Finds inverted repeats in nucleotide sequence(s) |
|
| |
recoder
(WSDL)
|
Find restriction sites to remove (mutate) with no translation change |
|
| |
redata
(WSDL)
|
Retrieve information from REBASE restriction enzyme database |
|
| |
remap
(WSDL)
|
Display restriction enzyme binding sites in a nucleotide sequence |
|
| |
restover
(WSDL)
|
Find restriction enzymes producing a specific overhang |
|
| |
restrict
(WSDL)
|
Report restriction enzyme cleavage sites in a nucleotide sequence |
|
| |
showseq
(WSDL)
|
Displays sequences with features in pretty format |
|
| |
silent
(WSDL)
|
Find restriction sites to insert (mutate) with no translation change |
|
| |
vrnaalifold
(WSDL)
|
RNA alignment folding |
|
| |
vrnaalifoldpf
(WSDL)
|
RNA alignment folding with partition |
|
| |
vrnacofold
(WSDL)
|
RNA cofolding |
|
| |
vrnacofoldconc
(WSDL)
|
RNA cofolding with concentrations |
|
| |
vrnacofoldpf
(WSDL)
|
RNA cofolding with partitioning |
|
| |
vrnadistance
(WSDL)
|
RNA distances |
|
| |
vrnaduplex
(WSDL)
|
RNA duplex calculation |
|
| |
vrnaeval
(WSDL)
|
RNA eval |
|
| |
vrnaevalpair
(WSDL)
|
RNA eval with cofold |
|
| |
vrnafold
(WSDL)
|
Calculate secondary structures of RNAs |
|
| |
vrnafoldpf
(WSDL)
|
Secondary structures of RNAs with partition |
|
| |
vrnaheat
(WSDL)
|
RNA melting |
|
| |
vrnainverse
(WSDL)
|
RNA sequences matching a structure |
|
| |
vrnalfold
(WSDL)
|
Calculate locally stable secondary structures of RNAs |
|
| |
vrnaplot
(WSDL)
|
Plot vrnafold output |
|
| |
vrnasubopt
(WSDL)
|
Calculate RNA suboptimals |
|
| |
jaspscan
(WSDL)
|
Scans DNA sequences for transcription factors |
|
| |
tfscan
(WSDL)
|
Identify transcription factor binding sites in DNA sequences |
|
| |
backtranambig
(WSDL)
|
Back-translate a protein sequence to ambiguous nucleotide sequence |
|
| |
backtranseq
(WSDL)
|
Back-translate a protein sequence to a nucleotide sequence |
|
| |
coderet
(WSDL)
|
Extract CDS |
|
| |
plotorf
(WSDL)
|
Plot potential open reading frames in a nucleotide sequence |
|
| |
prettyseq
(WSDL)
|
Write a nucleotide sequence and its translation to file |
|
| |
remap
(WSDL)
|
Display restriction enzyme binding sites in a nucleotide sequence |
|
| |
showorf
(WSDL)
|
Display a nucleotide sequence and translation in pretty format |
|
| |
showseq
(WSDL)
|
Displays sequences with features in pretty format |
|
| |
sixpack
(WSDL)
|
Display a DNA sequence with 6-frame translation and ORFs |
|
| |
transeq
(WSDL)
|
Translate nucleic acid sequences |
|
| |
fconsense
(WSDL)
|
Majority-rule and strict consensus tree |
|
| |
ftreedist
(WSDL)
|
Distances between trees |
|
| |
ftreedistpair
(WSDL)
|
Distances between two sets of trees |
|
| |
fcontrast
(WSDL)
|
Continuous character Contrasts |
|
| |
fclique
(WSDL)
|
Largest clique program |
|
| |
fdollop
(WSDL)
|
Dollo and polymorphism parsimony algorithm |
|
| |
fdolpenny
(WSDL)
|
Penny algorithm Dollo or polymorphism |
|
| |
ffactor
(WSDL)
|
Multistate to binary recoding program |
|
| |
fmix
(WSDL)
|
Mixed parsimony algorithm |
|
| |
fpars
(WSDL)
|
Discrete character parsimony |
|
| |
fpenny
(WSDL)
|
Penny algorithm |
|
| |
ffitch
(WSDL)
|
Fitch-Margoliash and Least-Squares Distance Methods |
|
| |
fkitsch
(WSDL)
|
Fitch-Margoliash method with contemporary tips |
|
| |
fneighbor
(WSDL)
|
Phylogenies from distance matrix by N-J or UPGMA method |
|
| |
fcontml
(WSDL)
|
Gene frequency and continuous character Maximum Likelihood |
|
| |
fgendist
(WSDL)
|
Compute genetic distances from gene frequencies |
|
| |
distmat
(WSDL)
|
Create a distance matrix from a multiple sequence alignment |
|
| |
fdiscboot
(WSDL)
|
Bootstrapped discrete sites algorithm |
|
| |
fdnacomp
(WSDL)
|
DNA compatibility algorithm |
|
| |
fdnadist
(WSDL)
|
Nucleic acid sequence Distance Matrix program |
|
| |
fdnainvar
(WSDL)
|
Nucleic acid sequence Invariants method |
|
| |
fdnaml
(WSDL)
|
Estimates nucleotide phylogeny by maximum likelihood |
|
| |
fdnamlk
(WSDL)
|
Estimates nucleotide phylogeny by maximum likelihood |
|
| |
fdnapars
(WSDL)
|
DNA parsimony algorithm |
|
| |
fdnapenny
(WSDL)
|
Penny algorithm for DNA |
|
| |
ffreqboot
(WSDL)
|
Bootstrapped genetic frequencies algorithm |
|
| |
fproml
(WSDL)
|
Protein phylogeny by maximum likelihood |
|
| |
fpromlk
(WSDL)
|
Protein phylogeny by maximum likelihood |
|
| |
fprotdist
(WSDL)
|
Protein distance algorithm |
|
| |
fprotpars
(WSDL)
|
Protein parsimony algorithm |
|
| |
frestboot
(WSDL)
|
Bootstrapped restriction sites algorithm |
|
| |
frestdist
(WSDL)
|
Distance matrix from restriction sites or fragments |
|
| |
frestml
(WSDL)
|
Restriction site maximum Likelihood method |
|
| |
fseqboot
(WSDL)
|
Bootstrapped sequences algorithm |
|
| |
fseqbootall
(WSDL)
|
Bootstrapped sequences algorithm |
|
| |
fdrawgram
(WSDL)
|
Plots a cladogram- or phenogram-like rooted tree diagram |
|
| |
fdrawtree
(WSDL)
|
Plots an unrooted tree diagram |
|
| |
garnier
(WSDL)
|
Predicts protein secondary structure using GOR method |
|
| |
helixturnhelix
(WSDL)
|
Identify nucleic acid-binding motifs in protein sequences |
|
| |
hmoment
(WSDL)
|
Calculate and plot hydrophobic moment for protein sequence(s) |
|
| |
pepcoil
(WSDL)
|
Predicts coiled coil regions in protein sequences |
|
| |
pepnet
(WSDL)
|
Draw a helical net for a protein sequence |
|
| |
pepwheel
(WSDL)
|
Draw a helical wheel diagram for a protein sequence |
|
| |
tmap
(WSDL)
|
Predict and plot transmembrane segments in protein sequences |
|
| |
topo
(WSDL)
|
Draws an image of a transmembrane protein |
|
| |
domainrep
(WSDL)
|
Reorder DCF file to identify representative structures. |
|
| |
psiphi
(WSDL)
|
Calculates phi and psi torsion angles from protein coordinates |
|
| |
rocon
(WSDL)
|
Generates a hits file from comparing two DHF files |
|
| |
seqwords
(WSDL)
|
Generates DHF files from keyword search of UniProt. |
|
| |
sigscan
(WSDL)
|
Generates hits (DHF file) from a signature search |
|
| |
backtranambig
(WSDL)
|
Back-translate a protein sequence to ambiguous nucleotide sequence |
|
| |
backtranseq
(WSDL)
|
Back-translate a protein sequence to a nucleotide sequence |
|
| |
charge
(WSDL)
|
Draw a protein charge plot |
|
| |
checktrans
(WSDL)
|
Reports STOP codons and ORF statistics of a protein |
|
| |
compseq
(WSDL)
|
Calculate the composition of unique words in sequences |
|
| |
emowse
(WSDL)
|
Search protein sequences by digest fragment molecular weight |
|
| |
freak
(WSDL)
|
Generate residue/base frequency table or plot |
|
| |
iep
(WSDL)
|
Calculate the isoelectric point of proteins |
|
| |
mwcontam
(WSDL)
|
Find weights common to multiple molecular weights files |
|
| |
mwfilter
(WSDL)
|
Filter noisy data from molecular weights file |
|
| |
octanol
(WSDL)
|
Draw a White-Wimley protein hydropathy plot |
|
| |
pepinfo
(WSDL)
|
Plot amino acid properties of a protein sequence in parallel. |
|
| |
pepstats
(WSDL)
|
Calculates statistics of protein properties |
|
| |
pepwindow
(WSDL)
|
Draw a hydropathy plot for a protein sequence |
|
| |
pepwindowall
(WSDL)
|
Draw Kyte-Doolittle hydropathy plot for a protein alignment |
|
| |
wordcount
(WSDL)
|
Count and extract unique words in molecular sequence(s) |
|
| |
antigenic
(WSDL)
|
Finds antigenic sites in proteins |
|
| |
digest
(WSDL)
|
Reports on protein proteolytic enzyme or reagent cleavage sites |
|
| |
echlorop
(WSDL)
|
Reports presence of chloroplast transit peptides |
|
| |
eiprscan
(WSDL)
|
Motif detection |
|
| |
elipop
(WSDL)
|
Prediction of lipoproteins |
|
| |
emast
(WSDL)
|
Motif detection |
|
| |
ememe
(WSDL)
|
Multiple EM for Motif Elicitation |
|
| |
ememetext
(WSDL)
|
Multiple EM for Motif Elicitation. Text file only. |
|
| |
enetnglyc
(WSDL)
|
Reports N-glycosylation sites in human proteins |
|
| |
enetoglyc
(WSDL)
|
Reports mucin type GalNAc O-glycosylation sites in mammalian proteins |
|
| |
enetphos
(WSDL)
|
Reports ser |
|
| |
epestfind
(WSDL)
|
Finds PEST motifs as potential proteolytic cleavage sites |
|
| |
eprop
(WSDL)
|
Reports propeptide cleavage sites in proteins |
|
| |
esignalp
(WSDL)
|
Reports protein signal cleavage sites |
|
| |
etmhmm
(WSDL)
|
Reports transmembrane helices |
|
| |
eyinoyang
(WSDL)
|
Reports O-(beta)-GlcNAc attachment sites |
|
| |
fuzzpro
(WSDL)
|
Search for patterns in protein sequences |
|
| |
fuzztran
(WSDL)
|
Search for patterns in protein sequences (translated) |
|
| |
helixturnhelix
(WSDL)
|
Identify nucleic acid-binding motifs in protein sequences |
|
| |
oddcomp
(WSDL)
|
Identify proteins with specified sequence word composition |
|
| |
patmatdb
(WSDL)
|
Searches protein sequences with a sequence motif |
|
| |
patmatmotifs
(WSDL)
|
Scan a protein sequence with motifs from the PROSITE database |
|
| |
pepcoil
(WSDL)
|
Predicts coiled coil regions in protein sequences |
|
| |
preg
(WSDL)
|
Regular expression search of protein sequence(s) |
|
| |
pscan
(WSDL)
|
Scans protein sequence(s) with fingerprints from the PRINTS database |
|
| |
sigcleave
(WSDL)
|
Reports on signal cleavage sites in a protein sequence |
|
| |
msbar
(WSDL)
|
Mutate a sequence |
|
| |
shuffleseq
(WSDL)
|
Shuffles a set of sequences maintaining composition |
|
| |
profit
(WSDL)
|
Scan one or more sequences with a simple frequency matrix |
|
| |
prophecy
(WSDL)
|
Create frequency matrix or profile from a multiple alignment |
|
| |
prophet
(WSDL)
|
Scan one or more sequences with a Gribskov or Henikoff profile |
|
| |
cathparse
(WSDL)
|
Generates DCF file from raw CATH files. |
|
| |
pdbtosp
(WSDL)
|
Convert swissprot:PDB codes file to EMBL-like format. |
|
| |
scopparse
(WSDL)
|
Generate DCF file from raw SCOP files. |
|
| |
ssematch
(WSDL)
|
Search a DCF file for secondary structure matches. |
|
| |
embossdata
(WSDL)
|
Find and retrieve EMBOSS data files |
|
| |
embossversion
(WSDL)
|
Reports the current EMBOSS version number |
|
